ideas_predict: ideas_predict

Description Usage Arguments Author(s) See Also

View source: R/ideas_predict.R

Description

Predict IDEAS states from input GWAS data supplied by ideas_make

Usage

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ideas_predict(.data, states_data = NULL, states = NULL,
  permute = FALSE, inter = 5, binsz = 200, pcut = 6, CI = 0.95,
  seed = NULL, db = config_db())

Arguments

.data

ideas_make input data

states

[NULL] TODO

permute

[FALSE] TODO

inter

[5] TODO

binsz

[200] Padding around each cred set SNP.

pcut

[6] TODO

CI

[0.95] Cred set confidence interval.

seed

[NULL] Set seed for RNG number generator.

db

= ['gtx::config_db()'] Database contained IDEAS states data.

alpha

[0.99] TODO

layer

[10] TODO

permute

[FALSE] TODO

states

Select subset of states. Not currently used as of 2019-01-11.

Author(s)

Karsten Sieber karsten.b.sieber@gsk.com

Karl Guo karl.x.guo@gsk.com

See Also

Other ideas_predict: ideas_gwas_plot, ideas_gwas_summarize, ideas_loci_summarize, ideas_make, ideas_preload_states, ideas_wrapper


tobyjohnson/gtx documentation built on Aug. 30, 2019, 8:07 p.m.