ideas_gwas_summarize: ideas_gwas_summarize

In tobyjohnson/gtx: Genetics ToolboX

Description

Summarize most likely cell type per GWAS analysis id.

Usage

ideas_gwas_summarize(.data, relaxed = 3, group = FALSE, n_cs_ge = 10,
  n_snps_ge = 10, impala = getOption("gtx.impala", NULL))

Arguments

.data	ideas_predict output
relaxed	[3] Numeric value, 1:10, rank cutoff_gt for inclusion. e.g. 3 = Must be in top 3 cell types.
group	[FALSE] TRUE = Group similar cell types.
n_cs_ge	[10] min # (>=) of cred sets to GWAS summarize
n_snps_ge	[10] min # (>=) of snps across all cred sets

Author(s)

Karsten Sieber [e-mail]

See Also

Other ideas_predict: ideas_gwas_plot, ideas_loci_summarize, ideas_make, ideas_predict, ideas_preload_states, ideas_wrapper

tobyjohnson/gtx documentation built on Aug. 30, 2019, 8:07 p.m.