int_coloc_pics_lite: int_coloc_pics_lite Test for colocalization of two PICS sets
In tobyjohnson/gtx: Genetics ToolboX

Description Usage Arguments Value Author(s)

int_coloc_pics_lite Test for colocalization of two PICS sets

int_coloc_pics_lite(data1, data2, pics1 = "PICS_probability",
  pics2 = "PICS_probability", rsid1 = "Linked_SNP",
  rsid2 = "Linked_SNP", rounded = 6, priorc1 = 1e-04,
  priorc2 = 1e-04, priorc12 = 1e-05)

`data1, data2`	PICS sets from read.pics or download.pics
`pics1, pics2`	column name to pull PICS prob from. Default = "PICS_probability"
`rsid1, rsid2`	column name to pull rsid from. Default = "Linked_SNP"
`rounded`	Decimal points to round posteriors to
`priorc1`	Prior probability for colocalization with siganl for data1 Default = 1e-4
`priorc2`	Prior probability for colocalization with siganl for data2 Default = 1e-4
`priorc12`	Prior probability for colocalization of both signals. Default = 1e-5