int_coloc_pics_lite: int_coloc_pics_lite Test for colocalization of two PICS sets

Description Usage Arguments Value Author(s)

View source: R/piccolo.R

Description

int_coloc_pics_lite Test for colocalization of two PICS sets

Usage

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int_coloc_pics_lite(data1, data2, pics1 = "PICS_probability",
  pics2 = "PICS_probability", rsid1 = "Linked_SNP",
  rsid2 = "Linked_SNP", rounded = 6, priorc1 = 1e-04,
  priorc2 = 1e-04, priorc12 = 1e-05)

Arguments

data1, data2

PICS sets from read.pics or download.pics

pics1, pics2

column name to pull PICS prob from. Default = "PICS_probability"

rsid1, rsid2

column name to pull rsid from. Default = "Linked_SNP"

rounded

Decimal points to round posteriors to

priorc1

Prior probability for colocalization with siganl for data1 Default = 1e-4

priorc2

Prior probability for colocalization with siganl for data2 Default = 1e-4

priorc12

Prior probability for colocalization of both signals. Default = 1e-5

Value

only H3 & H4 posteriors

Author(s)

Karsten Sieber karsten.b.sieber@gsk.com


tobyjohnson/gtx documentation built on Aug. 30, 2019, 8:07 p.m.