Tropical Fisheries Analysis

AG | Aggregation function for LBB |

alba | Length-frequency data of the clam Abra alba |

BH | B & H equations for LBB |

Bhattacharya | Bhattacharya's method |

bream | bream data |

catchCurve | Catch curve |

date2yeardec | Date - Year conversion |

ELEFAN | ELEFAN |

ELEFAN_GA | ELEFAN_GA |

ELEFAN_SA | ELEFAN_SA |

emperor | Emperor data |

gillnet | Gillnet data |

gillnetfit | Millar's original gillnet selectivity fitting function |

goatfish | Yellowstriped goatfish data |

growth_length_age | Estimation of growth parameter using length-at-age data |

growth_tagging | Growth from tagging data |

haddock | Haddock data |

hake | Hake data |

LBB | Length-based Bayesian biomass estimator (LBB) |

lfqCreate | Create lfq data from length measurements |

lfqFitCurves | Fitting VBGF growth curves through lfq data |

lfqModify | Modify lfq data for further analysis |

lfqRestructure | Restructuring of length frequency data |

M_empirical | Empirical formulas for the estimation of natural mortality |

plot.Bhattacharya | Bhattacharya plot |

plot.catchCurve | Plotting catch curve |

plotLBB | Plotting LBB fit |

plotLBB.data | Plotting LBB data |

plotLBB.ts | Plotting LBB results over time |

plotLBB.year | Plotting LBB fit (single year) |

plot.lfq | Plotting of length frequency data (with VBGF curves) |

plot.predict_mod | Plotting prediction models yield per recruit and Thompson &... |

plot.prod_mod | Plotting production models |

plot.prod_mod_ts | Plotting time series production models |

plot.recruitment | Plot of recruitment patterns |

plot.select | Selectivity plot |

plot.select_Millar | Millar's selectivity plot |

plot.VPA | VPA plot |

powell_wetherall | Powell-Wetherall method |

predict_mod | Prediction models |

prod_mod | Production models |

prod_mod_ts | Production models with time series fitting |

rcurves_Millar | Predict gillnet selectivity (old Millar method) |

recruitment | Recruitment patterns |

rtypes_Millar | Millar's selectivity types |

select | Selectivity model |

select_Millar | Millar's selectivity model |

select_ogive | Selectivity patterns |

shrimps | Shrimp data |

startingPoint2tanchor | Convert FiSAT's starting point to t_anchor value |

stock_sim | Stock simulation |

synCAA1 | Synthetic Catch-at-age data I |

synCAA2 | Synthetic Catch-at-age data II |

synCPUE | Synthetical catch per unit of effort (CPUE) dataset |

synLFQ1 | Synthetic length-frequency data I |

synLFQ2 | Synthetic length frequency data II |

synLFQ3 | Synthetic length frequency data III |

synLFQ4 | Synthetic length-frequency data IV (with seasonal... |

synLFQ5 | Synthetic length-frequency data V (without seasonal... |

synLFQ6 | Synthetic length-frequency data VI (without seasonal... |

synLFQ7 | Synthetic length-frequency data VII with seasonal oscillation |

synLFQ8 | Synthetic length-frequency data VIII with variable harvest... |

synLFQ8res | Synthetic length-frequency data VIII with variable harvest... |

tilapia | Tilapia data |

trammelnet | Trammel net data |

trawl_fishery_Java | Data from the trawl fishery off the North coast of Java |

VBGF | Von Bertalanffy Growth function (VBGF) |

VPA | Virtual Population Analysis (VPA) |

whiting | Whiting data |

yeardec2date | Year - Date conversion |

ypr | Yield per recruit |

ypr_sel | Yield per recruit with selection ogive |

Z_BevertonHolt | Beverton & Holt's Z-Equations |

Z_CPUE | Estimate Z from CPUE data |

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