plot.catchCurve: Plotting catch curve

Description Usage Arguments Details References Examples

View source: R/plot.catchCurve.R

Description

This function plots the results from the catchCurve model.

Usage

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## S3 method for class 'catchCurve'
plot(x, xaxis = "age", plot_selec = FALSE,
  col = c("blue", "darkgreen", "orange", "darkred"), cex = 1.5,
  xlim = NULL, ylim = NULL, xlab = "default", ylab = "default", ...)

Arguments

x

A list of the class "catchCurve" containing the results of the catchCurve model.

xaxis

Character defining if x axis should represent length or age (default: 'age')

plot_selec

logical; if TRUE the regression line is plotted for not fully exploited length groups and the probability of capture is plotted. This only works if the catchCurve was applied with calc_ogive == TRUE.

col

a specification for colour of regression points, line and annotation

cex

a numerical value giving the amount by which plotting text and symbols should be magnified relative to the default.

xlim

limits of x axis

ylim

limits of y axis

xlab

label of x axis. Default display by setting to "default".

ylab

label of y axis. Default display by setting to "default".

...

standard parameters of plot function

Details

A function to plot the results of the catchCurve model.

References

Sparre, P., Venema, S.C., 1998. Introduction to tropical fish stock assessment. Part 1. Manual. FAO Fisheries Technical Paper, (306.1, Rev. 2). 407 p.

Examples

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data(synLFQ3)
output <- catchCurve(synLFQ3, calc_ogive = TRUE)
plot(output, plot_selec = TRUE)

tokami/TropFishR documentation built on Aug. 24, 2018, 11:31 p.m.