tomateba/p53retriever: detection and display of p53 putative response elements (REs) on DNA sequences

p53retriever implements a pattern search algorithm that maps p53 response elements (REs) and ranks them according to predicted transactivation potentials in five classes. Besides canonical, full site REs, p53tracker contains specific pattern searches for non-canonical half sites and 3/4 sites. REs can be displayed along the input sequence in a graphical layout.

Getting started

Package details

AuthorToma Tebaldi, Sara Zaccara, Yari Ciribilli, Alberto Inga
MaintainerToma Tebaldi <>
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
tomateba/p53retriever documentation built on May 31, 2019, 6:10 p.m.