README.md

In tpall/entrezquery: Runs entrez query and returns reults as a tibble

Get document summaries for your entrez query

Run entrez database query. Wrapper around entrez esearch and esummary tools. Returns document summaries for query Ids in a data frame.

devtools::install_github("tpall/entrezquery")
library(entrezquery)

## Search GEO database
q <- "expression profiling by high throughput sequencing[DataSet Type]"
geo <- entrez_docsums(q, db = 'gds', retmax = 10)
geo

## Search Pubmed
q <- "science[journal] AND breast cancer AND 2016[pdat]"
pm <- entrez_docsums(query = q, db = "pubmed", retmax = 10)
pm

tpall/entrezquery documentation built on May 9, 2019, 8:32 a.m.