get_dirlist: Download file list from Entrez GEO repository ftp directory
In tpall/entrezquery: Runs entrez query and returns reults as a tibble
Description
Usage
Arguments
Examples
Description
Downloads list of file names from Entrez GEO repository.
- "suppl" Supplementary files
- "soft" SOFT formatted family file(s)
- "miniml" MINiML formatted family file(s)
- "matrix" Series Matrix File(s)
Usage
1
get_dirlist(Accession, dir)
Arguments
Accession
GEO Accession, a charcter string.
dir
Download family format, a character vector.
Examples
1
2
3
# Download supplementary and matrix file names
resp <- get_dirlist("GSE100206", dir = c("matrix", "suppl"))
resp
tpall/entrezquery documentation built on May 9, 2019, 8:32 a.m.
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Description Usage Arguments Examples
Description
Downloads list of file names from Entrez GEO repository. - "suppl" Supplementary files - "soft" SOFT formatted family file(s) - "miniml" MINiML formatted family file(s) - "matrix" Series Matrix File(s)
Usage
1 | get_dirlist(Accession, dir)
|
Arguments
Accession |
GEO Accession, a charcter string. |
dir |
Download family format, a character vector. |
Examples
1 2 3 | # Download supplementary and matrix file names
resp <- get_dirlist("GSE100206", dir = c("matrix", "suppl"))
resp
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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