entrez_docsums: Query entrez database

In tpall/entrezquery: Runs entrez query and returns reults as a tibble

Description

Run entrez database query. Returns document summaries for query Ids. Wrapper around entrez esearch and esummary tools.

Usage

entrez_docsums(query = NULL, uid = NULL, db = "gds", retmax = 500,
  ...)

Arguments

query	A GEO query string (optional).
uid	Character vector of UIDs (optional).
db	Entrez database. For example "gds" == GEO.
retmax	Maximum number of records to return, default is 500.
...	Further arguments to esearch and esummary APIs.

Value

a data_frame. Returns document summaries for query Ids.

Examples

## Not run: 
query <- "expression profiling by high throughput sequencing[DataSet Type]"
qres <- entrez_docsums(query = query, db = 'gds', retmax = 10)

## End(Not run)

tpall/entrezquery documentation built on May 9, 2019, 8:32 a.m.