download_gsefile: Download files from Entrez GEO repository

In tpall/entrezquery: Runs entrez query and returns reults as a tibble

Description

Downloads supplementary or MINiML formatted family files from Entrez GEO repository.

Usage

download_gsefile(gsefile, dest = ".", verbose = FALSE)

Arguments

gsefile	GEO file name, starting with Accession number, a character string.
dest	Path to local folder where downloaded files will be stored, a character string. Defaults to current directory.
verbose	Defaults to FALSE.

Examples

## Not run: 
c("GSE100206_family.xml.tgz",
"GSE100206_exoNormal_circRNA_RPM.txt.gz") %>%
sapply(download_gsefile)

## End(Not run)

tpall/entrezquery documentation built on May 9, 2019, 8:32 a.m.