Man pages for tpq/miSciTools
Miscellaneous Science Tools for Bioinformatic Analysis
| aptly | Aptly Characterize Aptamers |
| asTempObj | Set Temporary Object |
| classCheck | Class Check |
| ctd | Comparative Toxicogenomics Database |
| ctd.wide | Comparative Toxicogenomics Database (Wide Format) |
| demand | Load or Install Package |
| ensg2go | Convert ENSEMBL to GO |
| ensg2hgnc | Convert ENSEMBL to SYMBOL |
| fig.3D | Make 3D Plot |
| fig.cbind | Vertical Join Figures |
| fig.fromAdj | Plot Adjacency Matrix |
| fig.fromTable | Make Figure from Table |
| fig.label | Label Figure Panel |
| fig.pretty | Make 'ggplot' Pretty |
| fig.rbind | Horizontal Join Figures |
| fig.save | Save Figure |
| fig.tile | Tile Join Figures |
| fsPathClassRFE | Select Features by Recursive Feature Elimination |
| fsPRA | Select Features by Principal Ratio Analysis |
| fsPropd | Select Features by Differential Proportionality Analysis |
| fsSelbal | Select a Discriminative Balance |
| getRecount | Get recount2 Data |
| go2term | Convert GO to Terms |
| grapes-plus-grapes | Paste with Sum |
| hgnc2ensg | Convert SYMBOL to ENSEMBL |
| hgnc2go | Convert SYMBOL to GO |
| hgnc2liger | Quickly Run a Gene Set Enrichment |
| insert | Insert New Line |
| kegg | KEGGREST Database |
| lift | Lift Over Genome Build |
| linc2go | Linc2GO GeneSetCollection |
| long2wide | Make Wide Data from Long Data |
| migraph | 'igraph' Helper Functions |
| multiplot | Plot Multiple Graphs |
| packageCheck | Check for Packages |
| progress | Make Progress Bar |
| qsub | Qsub Linux Command |
| quick.anova | Run Quick ANOVA |
| quick.DESeq2 | Run DESeq2 LRT or Wald Test |
| quick.edgeR | Run edgeR Exact Test |
| randBoots | Randomly Generate Bootstraps |
| randFolds | Randomly Generate Folds |
| randSamps | Randomly Assign Class Labels |
| rda.reconstruct | Reconstruct Data from RDA Object |
| remove_geom | Remove GEOM From 'ggplot' Object |
| replaceNA | Replace NA Values |
| simpliGSEA | Perform Gene Set Enrichment Analysis |
| test.lequal | Test All Equal Within List |
| tttest | Make a Table of t-test Results |
| wide2long | Make Long Data from Wide Data |
| writeR | Write R Script |
| wwtest | Make a Table of Wilcoxon Rank Sum test Results |
