aptly: Aptly Characterize Aptamers
In tpq/miSciTools: Miscellaneous Science Tools for Bioinformatic Analysis

Description Usage Arguments Details Value

This function procedurally characterizes the secondary structure of RNA sequences using regular expressions. The characterizations provided may help identify potentially functional aptamers.

1	aptly(fasta, RNAfold = "RNAfold", cores = 1, select)

`fasta`	A multi-sequence FASTA file.
`RNAfold`	The commandline program to call. Append RNAfold arguments here.
`cores`	The number of cores to use.
`select`	A numeric or character vector. Selects which sequences from the multi-sequence FASTA file to include in the analysis.

This function requires a multi-sequence FASTA file as input. It also depends on the UNIX programs RNAfold and imagemagick. Install RNAfold through the ViennaRNA package.

A list of characteristics.

tpq/miSciTools documentation built on Sept. 16, 2019, 4:43 p.m.