fsPropd: Select Features by Differential Proportionality Analysis

In tpq/miSciTools: Miscellaneous Science Tools for Bioinformatic Analysis

Description

fsPropd selects features using the propd function from the propr package.

Usage

fsPropd(object, top = 0, keep = 0, modRatios = FALSE, ...)

Arguments

object	An ExprsArray object to undergo feature selection.
top	A numeric scalar or character vector. A numeric scalar indicates the number of top features that should undergo feature selection. A character vector indicates specifically which features by name should undergo feature selection. Set top = 0 to include all features. A numeric vector can also be used to indicate specific features by location, similar to a character vector.
keep	A numeric scalar. Specifies the number of top features that should get returned by the feature selection method. Use of keep is generally not recommended, but can speed up analyses of large data.
modRatios	A logical scalar. Toggles whether to compute theta from the feature ratios as provided. Set modRatios = TRUE if data were recasted by a prior modRatios call. If TRUE, the alpha and weighted arguments will not work.
...	Arguments passed to the detailed function.

Value

Returns an ExprsArray object.

tpq/miSciTools documentation built on Sept. 16, 2019, 4:43 p.m.