readbfile: read a PLINK bfile file into a matrix
In tshmak/lassosum: LASSO with summary statistics and a reference panel

read a PLINK bfile file into a matrix

1 2	readbfile(bfile, keep = NULL, extract = NULL, exclude = NULL, remove = NULL, chr = NULL, fillmissing = F)

`bfile`	PLINK bfile (as character, without the .bed extension)
`keep`	samples to keep
`extract`	SNPs to extract
`exclude`	SNPs to exclude
`remove`	samples to remove
`chr`	a vector of chromosomes
`fillmissing`	Whether to fill missing values with 0

A genotype matrix of 0,1, and 2 (possibly with NaNs)

tshmak/lassosum documentation built on Sept. 24, 2020, 9:41 a.m.

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