runElnet: Runs elnet with various parameters

Description Usage Arguments Value

View source: R/RcppExports.R

Description

Runs elnet with various parameters

Usage

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runElnet(lambda, shrink, fileName, r, N, P, col_skip_pos, col_skip,
  keepbytes, keepoffset, thr, x, trace, maxiter, startvec, endvec)

Arguments

fileName

the file name of the reference panel

r

a vector of correlations

N

number of subjects

P

number of position in reference file

thr

threshold

x

a numeric vector of beta coefficients

trace

if >1 displays the current iteration

maxiter

maximal number of iterations

lambda1

a vector of lambdas (lambda2 is 0)

col_skip_posR

which variants should we skip

col_skipR

which variants should we skip

keepbytesR

required to read the PLINK file

keepoffsetR

required to read the PLINK file

Constant

a constant to multiply the standardized genotype matrix

Value

a list of results


tshmak/lassosum documentation built on Sept. 24, 2020, 9:41 a.m.