runElnet: Runs elnet with various parameters

In tshmak/lassosum: LASSO with summary statistics and a reference panel

Description

Runs elnet with various parameters

Usage

runElnet(lambda, shrink, fileName, r, N, P, col_skip_pos, col_skip,
  keepbytes, keepoffset, thr, x, trace, maxiter, startvec, endvec)

Arguments

fileName	the file name of the reference panel
r	a vector of correlations
N	number of subjects
P	number of position in reference file
thr	threshold
x	a numeric vector of beta coefficients
trace	if >1 displays the current iteration
maxiter	maximal number of iterations
lambda1	a vector of lambdas (lambda2 is 0)
col_skip_posR	which variants should we skip
col_skipR	which variants should we skip
keepbytesR	required to read the PLINK file
keepoffsetR	required to read the PLINK file
Constant	a constant to multiply the standardized genotype matrix

Value

a list of results

tshmak/lassosum documentation built on Sept. 24, 2020, 9:41 a.m.