Files in tshmak/lassosum
LASSO with summary statistics and a reference panel
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
FeatureRequests.md
LICENSE
NAMESPACE
R/RcppExports.R
R/comp.ss.bim.R
R/elnetR.R
R/group.blocks.R
R/indeplasso.R
R/lassosum.R
R/lassosum.pipeline.R
R/lassosumR.R
R/logical.vector.R
R/matchpos.R
R/merge.lassosum.R
R/merge.lassosum.pipeline.R
R/ncol.bfile.R
R/not.a.file.R
R/nrow.bfile.R
R/p2cor.R
R/package_lassosum.R
R/parse.pheno.covar.R
R/parseargs.R
R/parseblocks.R
R/parseselect.R
R/pgs.R
R/pgs.default.R
R/pgs.vec.R
R/plot.validate.lassosum.R
R/pseudovalidate.R
R/pseudovalidate.lassosum.pipeline.R
R/pseudovalidation.R
R/pseudovalidationR.R
R/read.table2.R
R/readbfile.R
R/sd.bfile.R
R/selectregion.R
R/splitgenome.R
R/splitvalidate.R
R/splitvalidate.lassosum.pipeline.R
R/splitvec.from.bfile.R
R/subset.lassosum.pipeline.R
R/validate.R
R/validate.lassosum.pipeline.R
R/write.table2.R
README.md
changelog.md
inst/data/Berisa.AFR.hg19.bed
inst/data/Berisa.AFR.hg38.bed
inst/data/Berisa.ASN.hg19.bed
inst/data/Berisa.ASN.hg38.bed
inst/data/Berisa.EUR.hg19.bed
inst/data/Berisa.EUR.hg38.bed
inst/data/Berisa.R
inst/data/Berisa.README
inst/data/GenerateData.R
inst/data/refpanel.bed
inst/data/refpanel.bim
inst/data/refpanel.fam
inst/data/summarystats.txt
inst/data/testsample.bed
inst/data/testsample.bim
inst/data/testsample.covar.txt
inst/data/testsample.fam
inst/data/testsample.pheno.txt
inst/include/lassosum.h
inst/include/lassosum_RcppExports.h
inst/lassosum
inst/lassosum.R
lassosum_standalone.md
man/comp.ss.bim.Rd
man/countlines.Rd
man/elnet.Rd
man/elnetR.Rd
man/genotypeMatrix.Rd
man/group.blocks.Rd
man/indeplasso.Rd
man/lassosum.Rd
man/lassosum.pipeline.Rd
man/lassosumR.Rd
man/logical.vector.Rd
man/matchpos.Rd
man/merge.lassosum.Rd
man/merge.lassosum.pipeline.Rd
man/multiBed3.Rd
man/multiBed3sp.Rd
man/ncol.bfile.Rd
man/normalize.Rd
man/not.a.file.Rd
man/nrow.bfile.Rd
man/p2cor.Rd
man/parseargs.Rd
man/parseselect.Rd
man/pgs.Rd
man/pgs.vec.Rd
man/plot.validate.lassosum.Rd
man/pseudovalidate.Rd
man/pseudovalidation.Rd
man/pseudovalidationR.Rd
man/read.table2.Rd
man/readbfile.Rd
man/runElnet.Rd
man/sd.bfile.Rd
man/selectregion.Rd
man/splitgenome.Rd
man/splitvalidate.Rd
man/splitvec.from.bfile.Rd
man/subset.lassosum.pipeline.Rd
man/validate.Rd
old/README.md.bak
old/pval.thresh.R.bak
src/Makevars
src/Makevars.win
src/RcppExports.cpp
src/functions.cpp
tests/cp.lassosum.list.test.R
tests/cp.meta.test.R
tests/cvtests.R
tests/test.lassosum.pipeline.R
tests/test.standalone.R
tests/testthat.R
tests/testthat/test.bed
tests/testthat/test.bim
tests/testthat/test.elnet.R
tests/testthat/test.fam
tests/testthat/test.lassosum.R
tests/testthat/test.lassosumR.R
tests/testthat/test.lincom.multiBed3.R
tests/testthat/test.runElnet.R
