simulateSummarization: Simulate site-level summarization for PTM experiment
In tsunghengtsai/MSstatsPTM: Statistical Characterization of Post-translational Modifications
Description
Usage
Arguments
Value
Examples
Description
simulateSummarization simulates the summarized log2-intensity value
of a PTM site in each MS run. The value is randomly generated based on a
normal distribtuion, where the average log2-intensity is defined for each
condition
Usage
1
simulateSummarization(nGroup, nRep, mu, delta, sRep)
Arguments
nGroup
An integer to specify the number of conditions.
nRep
An integer to specify the number of replicates per condition.
mu
A numeric value of the overall mean log2-abundance.
delta
A numeric vector to specify the deviation of the mean
log2-abundance of each group from the overall mean.
sRep
A numeric. Standard deviation of the log2-intensities.
Value
A tibble with columns of group, run and
log2inty.
Examples
1
simulateSummarization(nGroup=2, nRep=3, 25, c(0, 1), 0.2)
tsunghengtsai/MSstatsPTM documentation built on Oct. 4, 2020, 5:51 p.m.
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Description Usage Arguments Value Examples
Description
simulateSummarization simulates the summarized log2-intensity value
of a PTM site in each MS run. The value is randomly generated based on a
normal distribtuion, where the average log2-intensity is defined for each
condition
Usage
1 | simulateSummarization(nGroup, nRep, mu, delta, sRep)
|
Arguments
nGroup |
An integer to specify the number of conditions. |
nRep |
An integer to specify the number of replicates per condition. |
mu |
A numeric value of the overall mean log2-abundance. |
delta |
A numeric vector to specify the deviation of the mean log2-abundance of each group from the overall mean. |
sRep |
A numeric. Standard deviation of the log2-intensities. |
Value
A tibble with columns of group, run and
log2inty.
Examples
1 | simulateSummarization(nGroup=2, nRep=3, 25, c(0, 1), 0.2)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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