Man pages for twbattaglia/btools
A suite of R function for all types of microbial diversity analyses
| analyze_contributions | Add meta data to contributions file |
| bf_ratio | Computer Bacteroidetes/Firmicutes ratio for each sample. |
| compare_alpha_diversity | Calculate alpha diversity statistics |
| compare_beta_diversity | Calculate beta diversity statistics over time. |
| create_phylo | Generic function for creating a phyloseq object from QIIME... |
| diversity_comparison | Compute pairwise diversity comparisons of different beta... |
| estimate_pd | Estimate phylogenetic diversity from phyloseq object |
| import_rcc | Import .RCC files |
| plotPCA3D | Plot DESeq2's PCA plotting with Plotly 3D scatterplot |
| remove_blanks | Remove blanks from OTU table |
