analyze_contributions: Add meta data to contributions file
In twbattaglia/btools: A suite of R function for all types of microbial diversity analyses
Description
Usage
Arguments
Value
Description
This function loads a file as a matrix. It assumes that the first column
contains the rownames and the subsequent columns are the sample identifiers.
Any rows with duplicated row names will be dropped with the first one being
kepted.
Usage
1
2
analyze_contributions(contributions_fp, contributions_id = "Sample",
mappingfile_fp, mappingfile_id = "X.SampleID")
Arguments
contributions_fp
File location of the metagenomic_contributions.py output.
mappingfile_fp
File location of the input sample metadata.
Value
A very long dataframe with taxa information and sample metadata for each observed OTU.
twbattaglia/btools documentation built on May 3, 2019, 1:51 p.m.
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Description Usage Arguments Value
Description
This function loads a file as a matrix. It assumes that the first column contains the rownames and the subsequent columns are the sample identifiers. Any rows with duplicated row names will be dropped with the first one being kepted.
Usage
1 2 | analyze_contributions(contributions_fp, contributions_id = "Sample",
mappingfile_fp, mappingfile_id = "X.SampleID")
|
Arguments
contributions_fp |
File location of the metagenomic_contributions.py output. |
mappingfile_fp |
File location of the input sample metadata. |
Value
A very long dataframe with taxa information and sample metadata for each observed OTU.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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