remove_blanks: Remove blanks from OTU table
In twbattaglia/btools: A suite of R function for all types of microbial diversity analyses
Description
Usage
Arguments
Value
Description
This function will remove the OTU from blanks within the
an OTU table, for each plate/run
Usage
1
2
remove_blanks(phylo, runID = "Run_number", blankID = "Group",
blankName = "blank", removeBlank = F)
Arguments
phylo
A phyloseq object with all samples per run.
runID
The column name used to identify the different runs/plates.
blankID
The column name used to identify the blanks.
blankName
The name of the factor which describes the blanks.
removeBlank
Should blank sample be removed from resulting phyloseq object.
Value
A phyloseq object with the OTU's removed from each plate per plate-blank
twbattaglia/btools documentation built on May 3, 2019, 1:51 p.m.
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Description Usage Arguments Value
Description
This function will remove the OTU from blanks within the an OTU table, for each plate/run
Usage
1 2 | remove_blanks(phylo, runID = "Run_number", blankID = "Group",
blankName = "blank", removeBlank = F)
|
Arguments
phylo |
A phyloseq object with all samples per run. |
runID |
The column name used to identify the different runs/plates. |
blankID |
The column name used to identify the blanks. |
blankName |
The name of the factor which describes the blanks. |
removeBlank |
Should blank sample be removed from resulting phyloseq object. |
Value
A phyloseq object with the OTU's removed from each plate per plate-blank
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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