diversity_comparison: Compute pairwise diversity comparisons of different beta...
In twbattaglia/btools: A suite of R function for all types of microbial diversity analyses
Description
Usage
Arguments
Value
Description
The function will generate the distance comparisons of various estimates found in the vegan package.
The output will be in a dataframe format to generate additionally analyses of the distance
comparisons.
Usage
1
2
3
diversity_comparison(phylo, distance = c("jsd", "unifrac", "wunifrac",
"dpcoa", "jaccard", "manhattan", "bray", "morisita", "horn", "chao",
"canberra", "euclidean"))
Arguments
phylo
An input phyloseq object.
distance
Distance metrics to use for the pairwise comparisons.
Value
A dataframe of distance comparions.
twbattaglia/btools documentation built on May 3, 2019, 1:51 p.m.
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Description Usage Arguments Value
Description
The function will generate the distance comparisons of various estimates found in the vegan package. The output will be in a dataframe format to generate additionally analyses of the distance comparisons.
Usage
1 2 3 | diversity_comparison(phylo, distance = c("jsd", "unifrac", "wunifrac",
"dpcoa", "jaccard", "manhattan", "bray", "morisita", "horn", "chao",
"canberra", "euclidean"))
|
Arguments
phylo |
An input phyloseq object. |
distance |
Distance metrics to use for the pairwise comparisons. |
Value
A dataframe of distance comparions.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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