Man pages for ubioinformat/TraRe
Transcriptional Rewiring
| create_html_summary | Create HTML summary |
| createModuleSummary | Create module summary |
| generatecliques | Cliques generation and plot displaying. |
| html_from_graph | Html generation |
| LINKER_run | GRN inference via selected model. |
| LINKER_runPhase1 | Phase I : module generation |
| LINKER_runPhase2 | Phase II : bipartite graphs generation |
| NET_run | Single gene network approaches. |
| plot_igraph | Plotting functions for Gene Regulatory Network. |
| preparerewiring | Prepare rewiring data for running the method. |
| rewiring_gene_level | Perform the rewiring at the gene level |
| rewiring_regulon_level | Perform the rewiring at the regulon level |
| rewiring_test | Generate stats for the rewiring method. |
| runrewiring | GRN Modules Rewiring Method. |
| TraRe | Transcriptional Rewiring package for R. |
| trare_preprocessing | Preprocess prior to LINKER_run and run_rewiring method |
