plot_metrics: plot metrics, summarise by condition

In uhlitz/incucyter: Analysing IncuCyte ZOOM® data in R

Description

plot_microplate() plots microplate for a given metric.

Usage

plot_metrics(incu_tbl, analysis_job = unique(incu_tbl$Analysis_Job),
  metric = unique(incu_tbl$Metric), color = "Treatment", linetype = NULL,
  label = NULL, alpha = 0.5, summarise = T)

Arguments

incu_tbl	A tibble generated with read_incu
analysis_job	Which runs should be plotted (e.g. "Experiment_I")?
metric	Which metrics (e.g. "Phase_Confluence")?
color	Which columns from your annotation table should be used for coloring?
label	Which columns from your annotation table should be used as a text label?
summarise	plot mean values instead of single images

Value

A tibble of incucyte metrics.

Examples

incu_tbl <- read_incu(file = system.file("extdata", "sample_data_GO_Confluence_percent.txt",
package = "incucyter"),
annotation = system.file("extdata", "sample_data_annotation.tsv",
package = "incucyter"))
plot_metrics(incu_tbl, color = c("Treatment"), label = c("Treatment"), summarise = T)

uhlitz/incucyter documentation built on May 3, 2019, 2:23 p.m.