plot_microplate: plot microplate graphs

In uhlitz/incucyter: Analysing IncuCyte ZOOM® data in R

Description

plot_microplate() plots microplate for a given metric.

Usage

plot_microplate(incu_tbl, analysis_job = incu_tbl$Analysis_Job[1],
  metric = incu_tbl$Metric[1], color = "Treatment", label = NULL,
  summarise = F)

Arguments

incu_tbl	A tibble generated with read_incu
analysis_job	Which run should be plotted (e.g. "Experiment_I")?
metric	Which metric (e.g. "Phase_Confluence")?
color	Which columns from your annotation table should be used for coloring?
label	Which columns from your annotation table should be used as a text label?
summarise	plot mean values instead of single images

Value

A tibble of incucyte metrics.

Examples

incu_tbl <- read_incu(file = system.file("extdata", "sample_data_GO_Confluence_percent.txt", package = "incucyter"),
                      annotation = system.file("extdata", "sample_data_annotation.tsv", package = "incucyter"))
plot_microplate(incu_tbl, metric = "Green_Confluence", color = c("Treatment"), label = c("Treatment"), summarise = T)

uhlitz/incucyter documentation built on May 3, 2019, 2:23 p.m.