dataSim: Simulates data from bayou models

In uyedaj/bayou: Bayesian Fitting of Ornstein-Uhlenbeck Models to Phylogenies

Simulates data from bayou models

Description

This function simulates data for a given set of parameter values.

Usage

dataSim(pars, model, tree, map.type = "pars", SE = 0, phenogram = TRUE, ...)

Arguments

pars	A bayou formated parameter list
model	The type of model specified by the parameter list (either "OU", "OUrepar" or "QG").
tree	A tree of class 'phylo'
map.type	Either "pars" if the regimes are taken from the parameter list, or "simmap" if taken from the stored simmap in the tree
SE	A single value or vector equal to the number of tips specifying the measurement error that should be simulated at the tips
phenogram	A logical indicating whether or not the simulated data should be plotted as a phenogram
...	Optional parameters passed to phenogram(...).

Details

dataSim Simulates data for a given bayou model and parameter set

uyedaj/bayou documentation built on Jan. 28, 2024, 5:09 a.m.