View source: R/bayou-mcmc-utilities.R
load.bayou | R Documentation |
load.bayou
loads a bayouFit object that was created using bayou.mcmc()
load.bayou(bayouFit, saveRDS = TRUE, file = NULL, cleanup = FALSE, ref = FALSE)
bayouFit |
An object of class |
saveRDS |
A logical indicating whether the resulting chains should be saved as an *.rds file |
file |
An optional filename (possibly including path) for the saved *.rds file |
cleanup |
A logical indicating whether the files produced by |
ref |
A logical indicating whether a reference function is also in the output |
If both save.Rdata
is FALSE
and cleanup
is TRUE
, then load.bayou
will trigger a
warning and ask for confirmation. In this case, if the results of load.bayou()
are not stored in an object,
the results of the MCMC run will be permanently deleted.
## Not run:
data(chelonia)
tree <- chelonia$phy
dat <- chelonia$dat
prior <- make.prior(tree)
fit <- bayou.mcmc(tree, dat, model="OU", prior=prior,
new.dir=TRUE, ngen=5000)
chain <- load.bayou(fit, save.Rdata=FALSE, cleanup=TRUE)
plot(chain)
## End(Not run)
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