gelman.R: Calculate Gelman's R statistic

In uyedaj/bayou: Bayesian Fitting of Ornstein-Uhlenbeck Models to Phylogenies

Calculate Gelman's R statistic

Description

Calculate Gelman's R statistic

Usage

gelman.R(parameter, chain1, chain2, freq = 20, start = 1, plot = TRUE, ...)

Arguments

parameter	The name or number of the parameter to calculate the statistic on
chain1	The first bayouMCMC chain
chain2	The second bayouMCMC chain
freq	The interval between which the diagnostic is calculated
start	The first sample to calculate the diagnostic at
plot	A logical indicating whether the results should be plotted
...	Optional arguments passed to gelman.diag(...) from the coda package

uyedaj/bayou documentation built on Jan. 28, 2024, 5:09 a.m.