################################################################################
#
#'
#' Function to get Myanmar MCCT study datasets and forms from ODK server.
#'
#' This function is a wrapper for a set of functions from the \code{odkr}
#' package.
#'
#' @param id Form ID. Can be one of several form IDs used by the
#' different forms designed for the MCCT study -
#' \code{baseline_mcct_final}, \code{baseline_mcct_anthro_final},
#' \code{baseline_townshipprofile_final}, \code{baseline_villprofile_final},
#' \code{MCCT_Baseline_Spotcheck}.
#' @param username ONA server username credentials. For
#' @param password ONA server password credentials.
#' @param start Include data from submission dates after (inclusive) this
#' start date in export to CSV. Date format \code{<yyyy/MM/dd>} and default is
#' current system date
#' @param end Include data from submission dates before (exclusive) this date
#' in export to CSV. Date format is \code{<yyyy/MM/dd>} and default value current
#' system date
#' @param filename Filename to use for data without the CSV file extension.
#' @param rep Logical. Does the form have repeat/s? Default FALSE.
#' @param rep.name A vector of repeat names to read in the form. Default
#' is NULL. Must be specified if \code{rep} is TRUE.
#'
#' @return A data.frame corresponding to dataset corresponding to the form ID
#' specified.
#'
#' @examples
#' \dontrun{
#' get_mcct_data(id = "baseline_mcct_final",
#' username = "validmeasures",
#' password = "6Y2-8yK-Nmk-Lbf",
#' filename = "main_form")
#' }
#'
#' @export
#'
#
################################################################################
get_mcct_data <- function(id, username, password,
start = Sys.Date(),
end = Sys.Date(),
filename,
rep = FALSE,
rep.name = NULL) {
## Create temporary directory
temp <- tempdir()
## Check if ODK Briefcase already available in tempdir
if(!file.exists(paste(temp, "/odkBriefcase_latest.jar", sep = ""))) {
## Get latest briefcase and put in temporary directory
odkr::get_briefcase(destination = temp)
}
## Pull ODK forms definitions and submissions from server
odkr::pull_remote(target = temp,
id = id,
from = "https://ona.io/valid_international",
to = temp,
username = username,
password = password)
## Export dataset
odkr::export_data(target = temp,
id = id,
from = temp,
to = temp,
start = start,
end = end,
filename = paste(filename, ".csv", sep = ""),
exclude = TRUE,
split = TRUE,
group.names = TRUE,
overwrite = TRUE)
## Read specified dataset
surveyData <- read.csv(paste(temp, "/", filename, ".csv", sep = ""),
stringsAsFactors = FALSE)
##
fullData <- surveyData
##
if(rep) {
fullData <- vector(mode = "list", length = length(rep.name) + 1)
names(fullData) <- c("surveyData", rep.name)
fullData[[1]] <- surveyData
for(i in rep.name) {
fullData[[i]] <- read.csv(paste(temp, "/", filename, "-", i, ".csv", sep = ""),
stringsAsFactors = FALSE)
}
}
## Return data.frame
return(fullData)
}
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