Description Usage Arguments Value Examples
View source: R/extract_pondrFIT.R
This function extracts the relevant data from the temporaty URL produced by analyzing a protein sequence in the PONDR-FIT protein disorder meta-predictor (http://original.disprot.org/pondr-fit.php). It then calculates average and percent disorder scores from the per-residue scores. Before using this function, URLs should be collected and put in a '.csv' file with the UniProt ID in the first column and URL in the second.
1 | extract_pondrFIT(path, save_raw = NULL, output = NULL)
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path |
A character string desctibing the path to the csv file containing URLs to be read. |
save_raw |
A character string describing the path to a *Directory* where intermediate files for each protein should be saved. If 'NULL', the intermediate files will not be written to csv. |
output |
A character string describing the path to write the output data frame. If 'NULL', an output file will not be written. |
A data frame containing the average disorder scores, percent disorder scores, and length (in addition to the UniProt ID and URL that were input).
1 2 | # extract_pondrFIT("inst/extdata/pondrfit-url.csv")
# extract_pondrFIT("data/pondrfit-url.csv", save_raw = NULL, output = "data/PONDR-FIT.csv")
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