string_data: Data on protein interaction networks.
In vanbibn/mineDisProt: Mine/Extract data on protein disorder from DisProt (and other databases)
Description
Usage
Format
Details
Description
An example dataset produced by the extract_string() function containing the
attributes on protein interactions calculated by several confidence levels
on STRING /urlhttps://string-db.org/.
Usage
1
Format
A matrix with 10 rows and 18 variables
Details
0.4, 0.7, 0.9. confidence levels
nodes. Number of nodes (proteins) in network
edges. Number of edges (interactions) in network
node_deg. Average node degree
lc_coef. Avgerage local clustering coeffficient
edges_Exp. Expected number of edges
p_PPI. PPI enrichment p-value
vanbibn/mineDisProt documentation built on April 30, 2020, 1:39 p.m.
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Description Usage Format Details
Description
An example dataset produced by the extract_string() function containing the attributes on protein interactions calculated by several confidence levels on STRING /urlhttps://string-db.org/.
Usage
1 |
Format
A matrix with 10 rows and 18 variables
Details
0.4, 0.7, 0.9. confidence levels
nodes. Number of nodes (proteins) in network
edges. Number of edges (interactions) in network
node_deg. Average node degree
lc_coef. Avgerage local clustering coeffficient
edges_Exp. Expected number of edges
p_PPI. PPI enrichment p-value
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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