extract_string: Extract data on the quantity of protein interactions given by...

In vanbibn/mineDisProt: Mine/Extract data on protein disorder from DisProt (and other databases)

Description

Extract data on the quantity of protein interactions given by STRING (https://string-db.org/) with the minimum number of interactions at medium (0.4), high (0.7), and highest (0.9) confidence.

Usage

extract_string(direct, output = NULL)

Arguments

direct	A character string describing the path to a Directory where all the text files are located. Note, the function will attempt to read every file in the directory so it should contain only the files you wish to be read.
output	A character string describing the path to write the output matrix. If 'NULL', an output file will not be written.

Value

A matrix containing the network stats at each of the three confidence levels for every protein.

Examples

# extract_string("inst/extdata/string/")

vanbibn/mineDisProt documentation built on April 30, 2020, 1:39 p.m.