Files in varemo/piano
Platform for integrative analysis of omics data
.BBSoptions
.gitignore
DESCRIPTION
NAMESPACE
NEWS
R/GSAheatmap.R
R/GSAsummaryTable.R
R/GSCsignificanceBatch.R
R/GSCstatBatch.R
R/GSCstatGenePerm.R
R/GSCstatSamplePerm.R
R/calcGeneSetStat.R
R/checkLoadArg.r
R/consensusHeatmap.R
R/consensusScores.R
R/diffExp.r
R/exploreGSAres.R
R/extractFactors.r
R/fdrGSEA.R
R/geneSetSummary.R
R/loadGSC.R
R/loadMAdata.r
R/networkPlot.R
R/networkPlot2.R
R/piano-package.R
R/polarPlot.r
R/print_ArrayData.r
R/print_GSAres.R
R/print_GSC.R
R/pvalFromDistribution.R
R/pvalFromFractionGenePerm.R
R/pvalFromFractionSamplePerm.R
R/runGSA.r
R/runGSAhyper.R
R/runQC.r
R/writeFilesForKiwi.R
README.md
data/gsa_input.RData
data/gsa_results.RData
inst/CITATION
inst/extdata/norm_data.txt.gz
inst/extdata/probe2metabolites_iIN800.txt.gz
inst/extdata/probe2metabolites_iTO977.txt.gz
inst/extdata/setup.txt
inst/shiny/css/cosmo.css
inst/shiny/css/style.css
inst/shiny/css/toggle_switch.css
inst/shiny/loggo.png
man/GSAheatmap.Rd
man/GSAsummaryTable.Rd
man/consensusHeatmap.Rd
man/consensusScores.Rd
man/diffExp.Rd
man/exploreGSAres.Rd
man/extractFactors.Rd
man/geneSetSummary.Rd
man/gsa_input.Rd
man/gsa_results.Rd
man/loadGSC.Rd
man/loadMAdata.Rd
man/networkPlot.Rd
man/networkPlot2.Rd
man/piano-package.Rd
man/polarPlot.Rd
man/runGSA.Rd
man/runGSAhyper.Rd
man/runQC.Rd
man/writeFilesForKiwi.Rd
vignettes/Running_gene-set_analysis_with_piano.Rmd
vignettes/consensus.png
vignettes/diffexpfig.pdf
vignettes/heatmap.pdf
vignettes/naturenobf.bst
vignettes/networkplot.pdf
vignettes/networkplot2.pdf
vignettes/piano-vignette.Rnw
vignettes/qcfig.pdf
vignettes/references.bib
vignettes/rungsa.png
