Man pages for veltenlab/rnamagnet
Infers physical and signaling interactions from single-cell RNA-seq data
| getLigandsReceptors | Retrieve a database of ligand-receptor pairs |
| getRNAMagnetGenes | Extracts receptor-ligand pairs mediating interaction between... |
| NicheData10x | 10x dataset from mouse bone marrow |
| NicheDataLCM | LCM dataset from mouse bone marrow |
| NicheMarkers10x | Markers for populations defined by 10x genomics |
| NicheMetaDataLCM | Meta data for LCM dataset |
| PlotSignalingNetwork | Visualizes RNAMagnet output as a signaling network |
| RNAMagnetAnchors | Runs RNAMagnet for identifying localization of single cells... |
| RNAMagnetBase | Low-level function to run core RNA magnet steps |
| rnamagnet-class | RNAMagnet class |
| RNAMagnetSignaling | Runs RNAMagnet for identifying signaling interactions between... |
| runCIBERSORT | Runs CIBERSORT for decomposing bulk RNA-seq samples using a... |
