PlotSignalingNetwork: Visualizes RNAMagnet output as a signaling network
In veltenlab/rnamagnet: Infers physical and signaling interactions from single-cell RNA-seq data

Visualizes RNAMagnet output as a signaling network

1 2	PlotSignalingNetwork(rnamagnet, threshold = 0.01, colors = NULL, useLabels = T)

`rnamagnet`	An object of class `rnamagnet`, as produced by `RNAMagnetSignaling`
`threshold`	Threshold interaction strength for including an edge in the network.
`colors`	A named vector of colors to be used for plotting; names correspond to levels of `rnamagnet@class`
`useLabels`	Plot the population labels on the graph?
`return`	Determines object to return; one of "summary" or "rnamagnet-class"

Plots the network and invisibly returns an object of class igraph

veltenlab/rnamagnet documentation built on June 24, 2021, 6:19 p.m.

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