rnamagnet-class: RNAMagnet class
In veltenlab/rnamagnet: Infers physical and signaling interactions from single-cell RNA-seq data
Description
This class contains representation for the output of RNAMagnetBase.
Slots
similarityCell-cell distance matrix
anchorsMean gene expression matrix of anchor populations
interactionInteraction score matrix between cells and anchor populations
specificitySpecificity of interaction scores relative to similar cells
adhesivenessTotal interaction potential per cell
celltypePer-cell cell type annotation, copied over from seurat@ident
mylrThe output of getLigandsReceptors that this instance of RNAMagnet is based on
paramsNamed list of paramers used in RNAMagnetBase
veltenlab/rnamagnet documentation built on June 24, 2021, 6:19 p.m.
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Description
This class contains representation for the output of RNAMagnetBase.
Slots
similarityCell-cell distance matrix
anchorsMean gene expression matrix of anchor populations
interactionInteraction score matrix between cells and anchor populations
specificitySpecificity of interaction scores relative to similar cells
adhesivenessTotal interaction potential per cell
celltypePer-cell cell type annotation, copied over from
seurat@identmylrThe output of
getLigandsReceptorsthat this instance of RNAMagnet is based onparamsNamed list of paramers used in
RNAMagnetBase
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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