GetClusteringRuns: GetClusteringRuns

In vertesy/Seurat.utils: Seurat.utils - utility functions for Seurat

GetClusteringRuns

Description

The GetClusteringRuns function retrieves metadata column names associated with clustering runs, based on a pattern to match, "*snn_res.[0-9].[0-9]$", by default.

Usage

GetClusteringRuns(
  obj = combined.obj,
  res = FALSE,
  pat = "*snn_res.[0-9].[0-9]+$",
  v = TRUE
)

Arguments

obj	Seurat object, Default: combined.obj
res	Clustering resoluton to use, Default: FALSE.
pat	Pattern to match, Default: ⁠*snn_res.*[0-9]$⁠
v	verbose, Default: TRUE.

Value

Prints and returns the sorted unique cluster names as a character vector.

Examples

## Not run: 
if (interactive()) {
  GetClusteringRuns(obj = combined.obj, pat = "*snn_res.*[0-9]$")
}

## End(Not run)

vertesy/Seurat.utils documentation built on Dec. 4, 2024, 5:20 p.m.