RenameClustering: RenameClustering

In vertesy/Seurat.utils: Seurat.utils - utility functions for Seurat

RenameClustering

Description

Rename clustering in a Seurat object.

Usage

RenameClustering(
  namedVector = ManualNames,
  orig.ident = "RNA_snn_res.0.3",
  suffix.new.ident = "ManualNames",
  new.ident = ppp(orig.ident, suffix.new.ident),
  obj = combined.obj,
  suffix.plot = "",
  plot_umaps = TRUE,
  ...
)

Arguments

namedVector	named vector, where values = new, names(vec) = old
orig.ident	meta.data colname original
suffix.new.ident	How to name (suffix) the new identity. Default: "ManualNames"
new.ident	meta.data colname new
obj	Seurat object
suffix.plot	Suffix description (short string) to be added to the umap plots.
...	Pass any other parameter to the internally called functions (most of them should work).

vertesy/Seurat.utils documentation built on Dec. 4, 2024, 5:20 p.m.