UpdateSeuratObjectProperly: Update Seurat Object Properly, including Assays and DimReducs

In vertesy/Seurat.utils: Seurat.utils - utility functions for Seurat

Update Seurat Object Properly, including Assays and DimReducs

Description

This function is an extension on SeuratObject::UpdateSeuratObject(). It first calls UpdateSeuratObject(), to updates the class definitions of of a (v3) Seurat object, then it updates its assays to the 'Assay5' class, and updates the UMAP DimReduc to keys.

Usage

UpdateSeuratObjectProperly(obj, update.gene.symbols = TRUE)

Arguments

obj	A Seurat object to be updated. Default: None.
update.gene.symbols	Logical. If TRUE, gene symbols are updated to the latest version.

Value

An updated Seurat object.

Examples

## Not run: 
combined.obj <- UpdateSeuratObjectProperly(combined.obj)

## End(Not run)

vertesy/Seurat.utils documentation built on Dec. 4, 2024, 5:20 p.m.