downsampleSeuObj.and.Save: downsampleSeuObj.and.Save

In vertesy/Seurat.utils: Seurat.utils - utility functions for Seurat

downsampleSeuObj.and.Save

Description

Subset a compressed Seurat Obj and save it in wd. #

Usage

downsampleSeuObj.and.Save(
  obj = ORC,
  fraction = 0.25,
  seed = 1989,
  dir = OutDir,
  min.features = p$min.features,
  suffix = fraction,
  nthreads = .getNrCores()
)

Arguments

obj	Seurat object, Default: ORC
fraction	Fractional size to downsample to. Default: 0.25
seed	random seed used, Default: 1989
dir	Directory to save to. Default: OutDir
min.features	Minimum features
suffix	A suffix added to the filename, Default: ”

vertesy/Seurat.utils documentation built on Dec. 4, 2024, 5:20 p.m.