getClusterNames: Retrieve Cluster Names

In vertesy/Seurat.utils: Seurat.utils - utility functions for Seurat

Retrieve Cluster Names

Description

Extracts cluster names based on a specified identity class from a Seurat object.

Usage

getClusterNames(obj = combined.obj, ident = GetClusteringRuns(obj)[2])

Arguments

obj	A Seurat object. Default: combined.obj.
ident	The identity class from which to retrieve cluster names. Default uses the second clustering run from GetClusteringRuns(obj).

Value

Prints and returns the sorted unique cluster names as a character vector.

Examples

## Not run: 
getClusterNames(obj = combined.obj, ident = GetClusteringRuns(obj)[2])

## End(Not run)

vertesy/Seurat.utils documentation built on Dec. 4, 2024, 5:20 p.m.