getDiscretePalette: Safely generate a discrete color palette (NA).

In vertesy/Seurat.utils: Seurat.utils - utility functions for Seurat

Safely generate a discrete color palette (NA).

Description

Safe wrapper around Seurat's DiscretePalette(), which returns NA's if too many categories are requested

Usage

getDiscretePalette()

Arguments

ident.used	The identity column used for determining the number of clusters, Default: GetClusteringRuns()1
obj	Seurat object, Default: combined.obj
palette.used	The name of the palette to use, Default: c("alphabet", "alphabet2", "glasbey", "polychrome", "stepped")1
show.colors	Whether to display the colors in the palette, Default: FALSE.

Examples

## Not run: 
if (interactive()) {
  getDiscretePalette()
}

## End(Not run)

vertesy/Seurat.utils documentation built on Dec. 4, 2024, 5:20 p.m.