plot.expression.rank.q90: plot.expression.rank.q90

In vertesy/Seurat.utils: Seurat.utils - utility functions for Seurat

plot.expression.rank.q90

Description

Plot gene expression based on the expression at the 90th quantile (so you will not lose genes expressed in few cells).

Usage

## S3 method for class 'expression.rank.q90'
plot(obj = combined.obj, gene = "ACTB", filterZero = TRUE)

Arguments

obj	Seurat object, Default: combined.obj
gene	gene of interest, Default: 'ACTB'
filterZero	Remove genes whose quantile-90 expression in 0? Default: TRUE.

Examples

## Not run: 
if (interactive()) {
  plot.expression.rank.q90(gene = "SATB2")
}

## End(Not run)

vertesy/Seurat.utils documentation built on Dec. 4, 2024, 5:20 p.m.