qMarkerCheck.BrainOrg: Quickly Plot Key Markers in Brain Organoids

In vertesy/Seurat.utils: Seurat.utils - utility functions for Seurat

Quickly Plot Key Markers in Brain Organoids

Description

Generates plots for a predefined or custom set of gene markers within brain organoids, aiding in the quick assessment of their expression across different cells or clusters.

Usage

qMarkerCheck.BrainOrg(obj = combined.obj, custom.genes = FALSE, suffix = "")

Arguments

obj	Seurat object for visualization; Default: combined.obj.
custom.genes	Logical indicating whether to use a custom set of genes. If FALSE, a predefined list of key brain organoid markers is used; Default: FALSE.
suffix	Suffix for the folder name where the plots are saved; Default: "".

Examples

## Not run: 
qMarkerCheck.BrainOrg(combined.obj)
qMarkerCheck.BrainOrg(combined.obj, custom.genes = c("Gene1", "Gene2"))

## End(Not run)

vertesy/Seurat.utils documentation built on Dec. 4, 2024, 5:20 p.m.