qQC.plots.BrainOrg: Quickly Plot Key QC Markers in Brain Organoids

In vertesy/Seurat.utils: Seurat.utils - utility functions for Seurat

Quickly Plot Key QC Markers in Brain Organoids

Description

Generates and arranges UMAP plots for specified QC features from a Seurat object on an A4 page, facilitating a quick quality control (QC) overview.

Usage

qQC.plots.BrainOrg(
  obj = combined.obj,
  QC.Features = c("nFeature_RNA", "percent.ribo", "percent.mito", "nuclear.fraction",
    "percent.HGA"),
  prefix = "QC.markers.4.UMAP",
  suffix = "",
  title = sppu(prefix, QC.Features, suffix),
  nrow = 2,
  ncol = 2,
  ...
)

Arguments

obj	Seurat object to visualize; Default: combined.obj.
QC.Features	Vector of QC feature names to plot; Default: c("nFeature_RNA", "percent.ribo", "percent.mito", "nuclear.fraction").
prefix	Prefix for plot titles; Default: "QC.markers.4.UMAP".
suffix	Suffix for plot titles; Default: "".
title	Custom title for the composite plot; dynamically generated from prefix, QC.Features, and suffix.
nrow	Number of rows in the plot grid; Default: 2.
ncol	Number of columns in the plot grid; Default: 2.
...	Additional parameters for individual UMAP plots.

Examples

## Not run: 
qQC.plots.BrainOrg()

## End(Not run)

vertesy/Seurat.utils documentation built on Dec. 4, 2024, 5:20 p.m.