ww.check.quantile.cutoff.and.clip.outliers: Check Quantile Cutoff and Clip Outliers

In vertesy/Seurat.utils: Seurat.utils - utility functions for Seurat

Check Quantile Cutoff and Clip Outliers

Description

Checks a specified quantile cutoff and clips outliers from an expression vector, ensuring that a minimum number of cells expressing a gene remain.

Usage

ww.check.quantile.cutoff.and.clip.outliers(
  expr.vec = plotting.data[, gene],
  quantileCutoffX = quantileCutoff,
  min.cells.expressing = 10
)

Arguments

expr.vec	A numeric vector representing gene expression data.
quantileCutoffX	The quantile cutoff for clipping outliers.
min.cells.expressing	The minimum number of cells that should remain expressing after clipping.

Value

The expression vector with outliers clipped, ensuring the minimum number of cells expressing.

Examples

## Not run: 
expr.vec <- c(...)
quantileCutoff <- 0.99
min.cells.expressing <- 10
ww.check.quantile.cutoff.and.clip.outliers(expr.vec, quantileCutoff, min.cells.expressing)

## End(Not run)

vertesy/Seurat.utils documentation built on Dec. 4, 2024, 5:20 p.m.