PlotBiplotClusters: Plot clusters on a biplot.

In villardon/MultBiplotR: Multivariate Analysis Using Biplots in R

Description

Highlights several groups or clusters on a biplot representation.

Usage

PlotBiplotClusters(A, Groups = ones(c(nrow(A), 1)), TypeClus = "st",
                 ClusterColors = NULL, ClusterNames = NULL, centers =
                 TRUE, ClustConf = 1, Legend = FALSE, LegendPos =
                 "topright", CexClustCenters = 1,  ...)

Arguments

A	Coordinates of the points in the scattergram
Groups	Factor defining the groups to be highlited
TypeClus	Type of representation of the clusters. For the moment just a convex hull but in the future ellipses and stars will be added.
ClusterColors	A vector of colors with as many elements as clusters. If NULL the function slects the raibow colors.
ClusterNames	A vector of names with as many elements as clusters.
centers	Logical variable to control if centres of the clusters are plotted
ClustConf	Percent of points included in the cluster. only the ClusConf percent of the points nearest to the center will be used to calculate the cluster
Legend	Should a legend be plotted
LegendPos	Position of the legend.
CexClustCenters	Size of the cluster centres.
...	Any other graphical parameters

Details

The clusters to plot should be added to the biplot object using the function AddCluster2Biplot.

Value

It takes effects on a plot

Author(s)

Jose Luis Vicente Villardon

See Also

AddCluster2Biplot

Examples

data(iris)
bip=PCA.Biplot(iris[,1:4])
bip=AddCluster2Biplot(bip, NGroups=3, ClusterType="us", Groups=iris[,5], Original=FALSE)
plot(bip, PlotClus = TRUE)

villardon/MultBiplotR documentation built on June 5, 2021, 8:55 a.m.