API for vitkl/regNETcmap
Tools to study transcriptional regulation using perturbation screens followed by transcriptomic profiling (incl. CMAP, Perturb-seq)
| Global functions | |
|---|---|
| TFtargetsINcmap | Man page Source code |
| anyGeneID2PerturbAnno | Man page |
| attributesFiltersFromTo | Man page Source code |
| clusterCOMBS | Man page Source code |
| completeCellGeneCombs | Man page |
| countNonZeros | Man page Source code |
| findOrthologs | Man page Source code |
| findOrthologsHsMm | Man page Source code |
| findOrthologsMmHs | Man page Source code |
| geneName2PerturbAnno | Man page Source code |
| keep1OE | Man page Source code |
| ks.test_expl | Man page Source code |
| loadBIOMARTdatasets | Man page Source code |
| loadCMap | Man page Source code |
| mapIDs | Man page Source code |
| measureTrPhe | Man page Source code |
| measureTrPheSingle | Man page Source code |
| openCellInfo | Man page Source code |
| openFeatureData | Man page Source code |
| openPerturbDetails | Man page Source code |
| openpData | Man page Source code |
| perturbTable | Man page Source code |
| plotTFtargetsINcmap | Man page Source code |
| readCMAP | Man page Source code |
| readCMAPsubset | Man page Source code |
| reconstructCMAP | Man page Source code |
| regFromCMAP | Man page Source code |
| regFromCMAPSingle | Man page |
| regFromCMAPmcell | Man page |
| showLargestRegulons | Man page Source code |
| svdCMAP | Man page Source code |
| unzipCMapData | Man page Source code |
| writeLandMarkOnlyFile | Man page Source code |
