openCellInfo: Read connectivity map annotations
In vitkl/regNETcmap: Tools to study transcriptional regulation using perturbation screens followed by transcriptomic profiling (incl. CMAP, Perturb-seq)

openCellInfo reads Connectivity Map project cell line data

openFeatureData reads Connectivity Map project featureData

openpData read Connectivity Map project sample descriptions (pData)

openPerturbDetails read Connectivity Map project perturbation details

openCellInfo(CMap_files)

openFeatureData(CMap_files)

openpData(CMap_files)

openPerturbDetails(CMap_files)

`CMap_files`	a list of directories and urls produced by `loadCMap`
`CMap_files`	a list of directories and urls produced by `loadCMap`
`CMap_files`	a list of directories and urls produced by `loadCMap`
`CMap_files`	a list of directories and urls produced by `loadCMap`

data.table containing Cell line Information from the Connectivity map project

data.table containing featureData (featureData) from the Connectivity map project

data.table containing the sample descriptions (pData) (pData) from the Connectivity map project

data.table containing the perturbation details from the Connectivity map project

Vitalii Kleshchevnikov

vitkl/regNETcmap documentation built on Feb. 18, 2020, 3:43 a.m.

vitkl/regNETcmap index

README.md

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Description