API for vitkl/regNETcmap
Tools to study transcriptional regulation using perturbation screens followed by transcriptomic profiling (incl. CMAP, Perturb-seq)

Global functions
TFtargetsINcmap Man page Source code
anyGeneID2PerturbAnno Man page Source code
attributesFiltersFromTo Man page Source code
clusterCOMBS Man page Source code
completeCellGeneCombs Man page Source code
countNonZeros Man page Source code
findOrthologs Man page Source code
findOrthologsHsMm Man page Source code
findOrthologsMmHs Man page Source code
geneName2PerturbAnno Man page Source code
keep1OE Man page Source code
ks.test_expl Man page Source code
loadBIOMARTdatasets Man page Source code
loadCMap Man page Source code
mapIDs Man page Source code
measureTrPhe Man page Source code
measureTrPheSingle Man page Source code
openCellInfo Man page Source code
openFeatureData Man page Source code
openPerturbDetails Man page Source code
openpData Man page Source code
perturbTable Man page Source code
plotTFtargetsINcmap Man page Source code
readCMAP Man page Source code
readCMAPsubset Man page Source code
reconstructCMAP Man page Source code
regFromCMAP Man page Source code
regFromCMAPSingle Man page Source code
regFromCMAPmcell Man page Source code
showLargestRegulons Man page Source code
svdCMAP Man page Source code
unzipCMapData Man page Source code
writeLandMarkOnlyFile Man page Source code
vitkl/regNETcmap documentation built on Nov. 19, 2018, 7:56 a.m.