plotTFtargetsINcmap: Plot TF perturbation effects (CMap) on TF targets

In vitkl/regNETcmap: Tools to study transcriptional regulation using perturbation screens followed by transcriptomic profiling (incl. CMAP, Perturb-seq)

Description

Plot TF perturbation effects (CMap) on TF targets

Usage

plotTFtargetsINcmap(res, TFsels = NULL,
  title = "TF that positively regulate their targets \n(shRNA induces shift to the left)",
  lab_text_size = 2, lab_text_y = 1.2, lab_text_x = -2.2,
  strip.text_size = 8, vline_size = 1, xlim = c(-3.3, 3.3),
  ylim = c(0, 1.7))

Arguments

res	data.table containing summary of TF perturbation effects on TF targets returned by TFtargetsINcmap
TFsels	which TF to plot, defaults to all in res
xlim	passed to xlim

vitkl/regNETcmap documentation built on Feb. 18, 2020, 3:43 a.m.